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Long, D., Lee, R., Williams, P., Chan, C.Y.,
Ambros, V. and Ding, Y. (2007) Potent effect of target
structure on microRNA function.
Nat. Struct. Mol. Biol. 14, 287-294.
[ Abstract ]
[ PDF file ]
[ Supplementary information ]
[ Highlight by Nature 446, 587. ]
[ Faculty of 1000 Recommended ]
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Chan, C.Y. and Ding, Y. (2007) Boltzmann ensemble
features of RNA secondary structures: a comparative
analysis of biological RNA sequences and random shuffles.
J. Math. Biol. (To appear)
[ Pre-print PDF ]
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Shao, Y., Wu, Y., Chan, C.Y., McDonough, K. and
Ding, Y. (2006) Rational design and rapid screening of antisense
oligonucleotides for prokaryotic gene modulation.
Nucleic Acids Res. 34, 5660-5669.
[ Abstract ]
[ PDF file ]
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Ding, Y., Chan, C.Y. and Lawrence, C.E. (2006) Clustering
of RNA secondary structures with application to messenger RNAs.
J. Mol. Biol. 359, 554-571.
[ Abstract ]
[ PDF file ]
[ Related review article by Mathews, D.H. ]
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Ding, Y. (2006) Statistical and Bayesian approaches to
RNA secondary structure prediction.
RNA 12, 323-331.
[ Abstract ]
[ PDF file ]
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Chan, C.Y., Lawrence, C.E. and Ding, Y. (2005) Structure
clustering features on the Sfold Web server.
Bioinformatics 21, 3926-3928.
[ Abstract ]
[ PDF file ]
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Ding, Y., Chan, C.Y. and Lawrence, C.E. (2005) RNA
secondary structure prediction by centroids in a Boltzmann weighted ensemble.
RNA 11, 1157-1166.
[ Abstract ]
[ PDF file ]
[ Supplementary information ]
[ Faculty of 1000 Recommended ]
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Ding, Y. and Lawrence, C.E. (2005) Rational design of siRNAs with the Sfold software.
In RNA Interference: from Basic Science to Drug Development, ed. Krishnarao Appasani, Cambridge University Press. [ PDF file ]
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Ding, Y., Chan, C.Y. and Lawrence, C.E. (2004) Sfold web
server for statistical folding and rational design of nucleic acids.
Nucleic Acids Res. 32 Web Server issue, W135-W141.
[ Abstract ]
[ PDF file ]
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Ding, Y. and Lawrence, C.E. (2003) A statistical sampling algorithm for RNA secondary structure prediction.
Nucleic Acids Res. 31, 7280-7301.
[ Cover ]
[ Abstract ]
[ Article ]
[ Faculty of 1000 Must Read ]
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Ding, Y. (2002) Rational statistical design of antisense oligonucleotides for
high throughput functional genomics and drug target validation. Statistica Sinica 12, 273-296.
[ Abstract ]
[ PDF file ]
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Ding, Y. and Lawrence, C.E. (2001) Statistical
prediction of single-stranded regions in RNA secondary structure and application
to predicting effective antisense target sites and beyond. Nucleic Acids Res. 29, 1034-1046.
[ Abstract ]
[ PDF file ]
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Ding, Y. and Lawrence, C.E. (1999) A Bayesian statistical algorithm for RNA secondary structure prediction.
Computer & Chemistry 23, 387-400.
[ Abstract ]
[ PDF file ]
[
Comments in a review by Zuker (2000) Curr Opin Struct Biol.
10, 303-310. ]
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