miRNA Site_Position Hybrid Conformation LogitProb† 3′_bp* ΔGhybrid ΔGnucl* ΔGtotal* Site_Access* Upstream_Access (10nt)* Dwstream_Access (15nt)* Upstream_AU (20nt)* Dwstream_AU (20nt)* Site_Consv* Site_Location*
hsa-let-7a-3p 404-417 View 0.776 0 -16.600 -0.859 -3.071 0.263 0.532 0.404 0.700 0.800 0.999 0.326
hsa-miR-501-3p 295-303 View 0.765 1 -15.100 -0.011 -7.469 0.135 0.143 0.726 0.550 0.600 0.965 0.164
hsa-let-7a-3p 537-549 View 0.750 0 -16.500 -1.029 -7.861 0.406 0.499 0.320 0.700 0.650 0.997 0.524
hsa-let-7a-3p 537-557 View 0.737 0 -19.100 -1.130 -3.858 0.329 0.499 0.544 0.700 0.700 0.936 0.524
hsa-miR-501-3p 209-233 View 0.711 0 -18.800 -0.055 -1.926 0.332 0.376 0.763 0.650 0.800 0.998 0.036
hsa-miR-501-3p 266-285 View 0.696 1 -15.300 -3.907 -1.478 0.446 0.609 0.144 0.750 0.650 0.905 0.121
hsa-miR-501-3p 351-362 View 0.682 0 -18.700 -8.193 -6.724 0.326 0.277 0.640 0.550 0.700 1.000 0.247
hsa-miR-501-3p 474-491 View 0.680 0 -15.100 -0.082 0.694 0.121 0.611 0.333 0.550 0.650 1.000 0.430
hsa-let-7a-3p 404-423 View 0.665 0 -17.100 -0.357 -2.622 0.396 0.532 0.125 0.700 0.650 0.992 0.326
hsa-let-7a-3p 404-429 View 0.654 0 -17.400 -0.467 -1.960 0.320 0.532 0.295 0.700 0.600 0.955 0.326
hsa-miR-501-3p 295-309 View 0.642 1 -15.400 -0.011 -7.984 0.429 0.143 0.469 0.550 0.500 0.971 0.164
hsa-miR-501-3p 390-415 View 0.615 0 -16.900 -0.312 6.804 0.340 0.380 0.393 0.800 0.750 0.999 0.305
hsa-miR-501-3p 382-411 View 0.569 0 -16 -0.404 4.607 0.324 0.864 0.468 0.650 0.650 0.823 0.293
hsa-miR-501-3p 449-472 View 0.556 0 -15.600 0 1.761 0.351 0.409 0.157 0.550 0.600 1.000 0.393
hsa-miR-501-3p 602-627 View 0.534 0 -16.900 -0.250 1.197 0.367 0.279 0.356 0.450 0.650 0.507 0.621
hsa-let-7a-3p 455-496 View 0.521 0 -17 -3.094 0.519 0.348 0.224 0.110 0.450 0.600 0.998 0.402
hsa-miR-501-3p 312-349 View 0.516 1 -20.700 -4.221 4.992 0.285 0.742 0.396 0.650 0.450 0.871 0.189
hsa-let-7a-3p 188-230 View 0.515 1 -15.100 -0.632 9.627 0.352 0.535 0.639 0.800 0.750 0.998 0.004
hsa-let-7a-3p 455-490 View 0.515 0 -15.100 -0.329 4.742 0.291 0.224 0.333 0.450 0.600 0.997 0.402
hsa-miR-501-3p 505-549 View 0.514 1 -15.400 -0.824 8.917 0.369 0.240 0.320 0.550 0.650 0.885 0.476
hsa-miR-501-3p 428-445 View 0.489 0 -19.700 -6.454 -0.856 0.306 0.454 0.162 0.600 0.500 0.972 0.362
hsa-miR-501-3p 312-337 View 0.479 1 -16.900 -4.221 10.810 0.251 0.742 0.421 0.650 0.550 0.812 0.189
hsa-miR-501-3p 312-347 View 0.466 1 -17.900 -4.221 7.799 0.300 0.742 0.269 0.650 0.450 0.863 0.189
hsa-miR-501-3p 846-869 View 0.437 0 -16.300 -2.874 -5.415 0.540 0.413 0.311 0.350 0.550 0.147 0.984
hsa-miR-501-3p 787-802 View 0.424 0 -15.200 0 2.670 0.318 0.395 0.305 0.450 0.600 0.000 0.896
hsa-miR-501-3p 632-658 View 0.407 0 -15 -0.109 5.004 0.361 0.290 0.387 0.450 0.600 0.197 0.665
hsa-miR-501-3p 773-781 View 0.390 0 -18.900 -0.519 -4.745 0.324 0.346 0.445 0.300 0.500 0.364 0.875
hsa-miR-501-3p 802-835 View 0.385 0 -21 -1.008 2.337 0.352 0.292 0.498 0.500 0.550 0.009 0.918
hsa-miR-501-3p 632-662 View 0.351 0 -16 -0.074 6.521 0.370 0.290 0.436 0.450 0.550 0.265 0.665
hsa-miR-501-3p 846-881 View 0.309 0 -18.700 -2.921 -2.514 0.460 0.413 0.411 0.350 0.450 0.100 0.984
hsa-miR-501-3p 734-758 View 0.302 0 -16.600 -1.002 -4.418 0.461 0.285 0.293 0.600 0.300 0.022 0.817
hsa-miR-501-3p 734-760 View 0.297 0 -18.200 -1.002 -5.944 0.439 0.285 0.342 0.600 0.250 0.021 0.817
hsa-miR-501-3p 802-829 View 0.294 0 -18.300 -1.553 4.460 0.335 0.292 0.405 0.500 0.450 0.007 0.918
hsa-miR-501-3p 791-809 View 0.271 0 -17.400 -0.034 5.993 0.271 0.464 0.456 0.450 0.450 0.007 0.902

† Logistic probability, our measure of confidence in the predicted site, is used to sort the binding sites in descending order
* Feature included in our prediction model for the selected target region.

Feature definitions