| STarMir |
3832 sequences folded since March 1, 2007 |
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| Current size limit for the entire mRNA |
5000 bases
(Estimated
CPU time for some typical lengths)
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| Email address (required)
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| microRNA name (optional)
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Enter one microRNA sequence (required)
Paste your sequence into the given box OR click 'Browse' to
upload your sequence file. Sequence should be in FASTA or
plain sequence format. Characters other than A, C, G or
U in the sequence will be edited out.
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Sequence direction:
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| Target sequence name (optional)
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Enter 3' UTR of one target sequence
(required)
Paste your sequence into the given box OR click 'Browse' to
upload your sequence file. Sequence should be in FASTA or
plain sequence format. Characters other than A, T, C, G,
U or N in the sequence will be edited out.
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Sequence direction:
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Enter 5' UTR+CD of that target sequence
(strongly
recommended for more accurate folding results, based on
these considerations and
observations)
Paste your sequence into the given box OR click 'Browse' to
upload your sequence file. Sequence should be in FASTA or
plain sequence format. Characters other than A, T, C, G,
U or N in the sequence will be edited out.
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Sequence direction:
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| Report target hits from |
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| ΔGhybrid threshold |
kcal/mol |
| ΔGinitiation |
kcal/mol |
| Folding temperature |
37°C |
| Ionic conditions |
1M NaCl, no divalent ions |
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